PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0040729.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 384aa    MW: 41415.4 Da    PI: 7.224
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0040729.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.74.9e-3973197289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s++      
  Lj0g3v0040729.1  73 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSIPshlrss 166
                      789******************************************************************9998888888888877777777666 PP

              TCP  89 ..............................k 89 
                                                     
  Lj0g3v0040729.1 167 yfspnfslpqrrptffentstttaaaasttT 197
                      6666666666666655555555543333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3878238IPR005333Transcription factor, TCP
PROSITE profilePS5136927.50579133IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEGGDDFHHH FHHHHHHRQN FPLQLLEKKE DQEAASCSPS SPSSLAIISP EPATTSNQLA  60
AAEAEPSNSK KPPPKRATTK DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE  120
WLLQQAEPSV IAATGTGTIP ANFTSLNISL RSSGSSMSIP SHLRSSYFSP NFSLPQRRPT  180
FFENTSTTTA AAASTTTFLN FQPNSLNNMF QAKHEGLDLS EKPRHGAEQD LLSPSSSSSS  240
SSSQQQQHQV GSYFLQSSSV GTIPASHAQI PASIWMLANS NNNQGMSGGD WVNNSGLYRG  300
ALQSGLHFMN FPTHMALLPG QQLGSGIGGT GNVNEGHVSM LAGLNPYRPV IGVSESQASG  360
SQSHHDGGGE DDPRENNNHH HHHS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.91771e-178floral bud| pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155318.11e-150hypothetical protein PHAVU_003G190900g
SwissprotQ93Z003e-57TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0L9TSX01e-150A0A0L9TSX0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7V11e-150A0A0S3R7V1_PHAAN; Uncharacterized protein
STRINGGLYMA17G10760.21e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.13e-48TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14